NEURON simulation environment
From their website:
The NEURON simulation environment is used in laboratories and classrooms around the world for building and using computational models of neurons and networks of neurons.
In order to work with it on CoCalc, you need to add a bit of setup code.
To use NEURON in a Jupyter Notebooks, we have to delete the
$DISPLAY variable and add it to the
if 'DISPLAY' in os.environ:
Only then import
from neuron import h, __version__
If it doesn’t work, restart the kernel and run the first cell again and then import
If there is still a problem, please contact us.
Example worksheet: neron-yale.ipynb.
CoCalc supports graphical applications, but there are limits to how it works with NEURON.
X11 file to start such a virtual desktop environment,
and then run